BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB004H10SP1|AL425299
(818 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1362 0.0
>3x_Contig1017
Length = 3431
Score = 1362 bits (672), Expect = 0.0
Identities = 711/738 (96%), Gaps = 1/738 (0%)
Strand = Plus / Minus
Query: 2 gaggaatttgatcacgttcattgtcatttgaagtactatcctccatttgtactacacgaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaggaatttgatcacgttcattgtcatttgaagtactatcctccatttgtactacacgaa 681
Query: 62 tcgcatgaggatcckgaraagattaaggattcagccaattcacattcaaagargtttgtg 121
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 680 tcgcatgaggatcctgaaaagattaaggattcagccaattcacattcaaagaagtttgtg 621
Query: 122 aggcatttgcatcagcatatcgaaaaacatttgctaaaggacatcaaagagagaatcaag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggcatttgcatcagcatatcgaaaaacatttgctaaaggacatcaaagagagaatcaag 561
Query: 182 ctgcctgatttgaagtttaaagacaaggcaaaggragaatcgtttgaacacattgtatgg 241
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 ctgcctgatttgaagtttaaagacaaggcaaaggaagaatcgtttgaacacattgtatgg 501
Query: 242 raggataatgakgkracccagtatcacggtaaagatttcgaaatccatattaccgtggag 301
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagtataatgatgtaacccagtatcacggtaaagatttcgaaatccatattaccgtggag 441
Query: 302 tgccacaacgattcggctattgtagatgtcgattakktgacaaaaccactaacagckgcc 361
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 440 tgccacaacgattcggctattgtagatgtcgattatttgacaaaaccactaacagctgcc 381
Query: 362 gtcgaagcttagagaccattgttttattttgagtcacatgacctcaaatttctcactaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtcgaagcttagagaccattgttttattttgagtcacatgacctcaaatttctcactaaa 321
Query: 422 gcrtcgcgccttttgagagatacaacgaaacaggacccccaaaacgccgtaaaagtaacg 481
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcatcgcgccttttgagagatacaacgaaacaggacccccaaaacgccgtaaaagtaacg 261
Query: 482 taggcctgatttgagcgttcctatatatrcgctgattrgcgtgkttaatgactgartgaa 541
|||||||||||||||| ||||||||||| || | ||| ||||| ||||||||||| ||||
Sbjct: 260 taggcctgatttgagcattcctatatatacg-taattagcgtgtttaatgactgaatgaa 202
Query: 542 ttttatgattatctaaacatggctttctattcctcatacattatgccttgtcaaccaamc 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttttatgattatctaaacatggctttctattcctcatacattatgccttgtcaaccaacc 142
Query: 602 ccttttattttatgatamaaacccatcagaacatttcttctmacgtgacctmatattamg 661
||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |
Sbjct: 141 ccttttattttatgatacaaacccatcagaacatttcttctcacgtgacctcatattacg 82
Query: 662 tcttctgaagatacgtatccgtttaaaggaagaatttcmaggaaattttttttttttatt 721
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 81 tcttctgaagatacgtatccgtttaaaggaagaatttccaggaaattttttttttttatt 22
Query: 722 tmagtttcgatcgttctt 739
| ||||||||||||||||
Sbjct: 21 tcagtttcgatcgttctt 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,084
Number of Sequences: 1807
Number of extensions: 12084
Number of successful extensions: 450
Number of sequences better than 1.0e-20: 1
length of query: 818
length of database: 10,358,551
effective HSP length: 16
effective length of query: 802
effective length of database: 10,329,639
effective search space: 8284370478
effective search space used: 8284370478
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.8 bits)